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测序数据集

获取通过单分子实时（SMRT）测序产生的公开数据集。 

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Whole genome sequencing

Application Dataset Technology Sequencing system
Whole genome sequencing - Variant detection, assembly, epigenetics GIAB - HG002 HiFi long read Vega system
Variant detection, assembly, epigenetics Homo sapiens - GIAB trio HG002-4 HiFi long read Revio system - SPRQ chemistry
Tumor/normal COLO829 melanoma HiFi long read Revio system - SPRQ chemistry
Whole genome sequencing - Fiber-Seq chromatin assay Homo sapiens - HG002 HiFi long read Revio system - SPRQ chemistry
Variant detection, assembly, epigenetics Homo sapiens - GIAB trio HG002-4 HiFi long read Revio system
Tumor/normal COLO829 melanoma HiFi long read Revio system
Tumor/normal HCC1395 HiFi long read Revio system
Whole genome sequencing Various plant & animals - maize, mouse, and others HiFi long read Revio system
Whole genome sequencing Homo sapiens - GIAB trio HG002-4 SBB short read Onso sysyem
Assembly (ultra-low DNA input) Phlebotomus papatasi, Homo sapiens, Drosophila melanogaster HiFi reads Sequel II system
Assembly Food safety and infectious microbes – 96 plex HiFi reads Sequel II system

Targeted sequencing

Application Dataset Literature Technology Sequencing system
PureTarget Repeat expansion panel - Coriell samples PureTarget brochure HiFi long read Vega system
PureTarget Repeat expansion panel - Coriell samples PureTarget brochure HiFi long read Revio SPRQ
PureTarget Repeat expansion panel Coriell samples PureTarget brochure HiFi long read Sequel IIe System
PureTarget Repeat expansion panel HG001 and HG002 48-plex PureTarget brochure HiFi long read Revio system
PureTarget Repeat expansion panel HG001 and HG002 8-plex PureTarget brochure HiFi long read Sequel IIe System
Target Enrichment Twist Alliance Dark Genes Panel HiFi sequencing with Twist Bioscience target enrichment HiFi long read Revio system
Target Enrichment IDT xGen cfDNA & FFPE dataset Technical note SBB short read Onso system
Target Enrichment Twist Exome 2.0 NA12878 8-plex Twist Exome 2.0 NA12878 8-plex SBB short read Onso system
Target Enrichment SeraCare ctDNA w/Agilent capture panel SBB sequencing on SeraCare ctDNA using Agilent hybrid capture panel SBB short read Onso system
Target Enrichment Twist Alliance Dark Gene Panel Twist Alliance Dark Genes panel HiFi long read Sequel IIe System
Target Enrichment Twist Alliance Long Read PGx Panel Twist Alliance Dark Genes panel HiFi long read Sequel IIe System
Target Enrichment Twist Custom BRCA1/2 Panel HiFi sequencing with Twist Bioscience target enrichment HiFi long read Sequel IIe System
Amplicon sequencing CYP2D6 amplicon HiFi amplicon sequencing for pharmacogenetics: CYP2D6 HiFi long read Sequel IIe System

RNA sequencing

应用 数据集 资料下载 技术 测序系统
Onso 单细胞 Homo sapiens - PBMC 10x Chromium Single Cell 3' (1k and 10k cells) N/A SBB 短读长测序 Onso系统
Kinnex 单细胞 Homo sapiens - PBMC 10x Chromium Single Cell (5' and 3') libraries Kinnex single-cell application note HiFi长读长测序 Sequel II，Revio系统
Kinnex 单细胞 Homo sapiens – HG002 (10x 5') Kinnex single-cell application note HiFi长读长测序 Revio系统
Kinnex 全长RNA Homo sapiens - UHRR Kinnex full-length RNA application note HiFi长读长测序 Vega系统
Kinnex 全长RNA Homo sapiens - UHRR Kinnex full-length RNA application note HiFi长读长测序 Revio系统 – SPRQ化学发
Kinnex 全长RNA Homo sapiens – UHRR Kinnex full-length RNA application note HiFi长读长测序 Sequel II，Revio系统
Kinnex 全长RNA Homo sapiens – HG002 Kinnex full-length RNA application note HiFi长读长测序 Revio系统
Kinnex 全长RNA Homo sapiens - Heart Kinnex full-length RNA application note HiFi长读长测序 Revio系统
Kinnex 全长RNA Homo sapiens - Cerebellum Kinnex full-length RNA application note HiFi长读长测序 Revio系统

Metagenomics

Application Dataset Data type PacBio system
Kinnex 16S rRNA ZymoBIOMICS Fecal Reference with TruMatrix Technology (human) HiFi long read Sequel II and Revio systems
Kinnex 16S rRNA Mixture: ZymoBIOMICS Gut Microbiome Standard, ZymoBIOMICS Fecal Reference with TruMatrix™ Technology, ATCC 20 Strain Even Mix Genomic Material, ATCC 20 Strain Staggered Mix Genomic Material HiFi long read Sequel II and Revio systems
Metagenomic profiling and assembly ZymoBIOMICS Fecal Reference with TruMatrix Technology (human) HiFi long read Revio system
Metagenomic profiling and assembly Zymo wastewater analysis SBB short read Onso system
Metagenomic profiling and assembly ZymoBIOMICS Fecal Reference with TruMatrix Technology (human) HiFi long read Sequel II system
Metagenomic profiling and assembly HiFi long read Sequel II system
Metagenomic profiling and assembly HiFi long read Sequel II system
Full-length 16S sequencing HiFi long read Sequel II system

Gene therapy vectors

Application Dataset Data type PacBio system
AAV scAAV 8-plex – Vector Biolabs rh10-CBA-eGFP HiFi reads Sequel II system
AAV ssAAV – ViGene pAV-CMF-GFP HiFi reads Sequel II system
AAV ssAAV-scAAV 1:10 mixture HiFi reads Sequel II system

File formats

Dataset Data type PacBio system
8 SMRT Cell run directory Directory Revio system
HiFi reads Sequel IIe system
HiFi reads Sequel IIe system

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