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测序数据集

获取通过单分子实时（SMRT）测序产生的公开数据集。 

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Whole genome sequencing

Application Dataset Data type PacBio system
Variant detection, assembly, epigenetics Homo sapiens - GIAB sample HG002 with 5mC calls HiFi reads Revio system
Tumor/normal COLO829 melanoma HiFi reads Revio system
Whole genome sequencing Various plant & animals - maize, mouse, and others HiFi reads Revio system
Assembly (ultra-low DNA input) Phlebotomus papatasi, Homo sapiens, Drosophila melanogaster HiFi reads Sequel II system
Assembly Food safety and infectious microbes – 96 plex HiFi reads Sequel II system

Targeted sequencing

Application Dataset Data Type PacBio System
HiFi Target Enrichment Twist Alliance Dark Genes Panel HiFi reads Revio system
Short-read Target Enrichment SeraCare ctDNA w/Agilent capture panel SBB reads Onso system
HiFi Target Enrichment Twist Alliance Dark Gene Panel HiFi reads Sequel IIe System
HiFi Target Enrichment Twist Alliance Long Read PGx Panel HiFi reads Sequel IIe System
HiFi Target Enrichment Twist Custom BRCA1/2 Panel HiFi reads Sequel IIe System
Amplicon sequencing CYP2D6 amplicon HiFi reads Sequel IIe System

RNA sequencing

Application Dataset Data type PacBio system
MAS-Seq single cell Homo sapiens - PBMC 10x Chromium Single Cell 3' libraries HiFi reads Sequel II and Revio systems
Whole transcriptome HiFi reads Sequel II system
Whole transcriptome HiFi reads Sequel II system

Metagenomics

Application Dataset Data type PacBio system
Metagenomic profiling and assembly ZymoBIOMICS Fecal Reference with TruMatrix Technology (human) HiFi reads Revio system
Metagenomic profiling and assembly ZymoBIOMICS Fecal Reference with TruMatrix Technology (human) HiFi reads Sequel II system
Metagenomic profiling and assembly HiFi reads Sequel II system
Metagenomic profiling and assembly HiFi reads Sequel II system
Full-length 16S sequencing HiFi reads Sequel II system

Gene therapy vectors

Application Dataset Data type PacBio system
AAV scAAV 8-plex – Vector Biolabs rh10-CBA-eGFP HiFi reads Sequel II system
AAV ssAAV – ViGene pAV-CMF-GFP HiFi reads Sequel II system
AAV ssAAV-scAAV 1:10 mixture HiFi reads Sequel II system

COVID-19 sequencing

Application Dataset Data type PacBio system
SARS-CoV-2 surveillance Omicron samples HiFi reads Sequel II system
SARS-CoV-2 surveillance Synthetic RNA controls HiFi reads Sequel II system
SARS-CoV-2 surveillance Surveillance samples HiFi reads Sequel II system

File formats

Dataset Data type PacBio system
8 SMRT Cell run directory Directory Revio system
HiFi reads Sequel IIe system
HiFi reads Sequel IIe system

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