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多重分析

PacBio 系统能够在单个 SMRT Cell 上对多个样品进行测序,增加每次测序样本的数量,优化高通量测序并提高您的研究效率

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用多重测序降低你的每份样本的成本

我们的多路复用选项允许大量的样品文库在SMRT细胞上同时被汇集和测序。在针对特定的基因组区域或处理较小的基因组时,样品多路复用很有用。

通过在双链DNA的两端加入PacBio特定的条形码,对样品进行编码,以便在数据分析前对读数进行识别和分类。条形码位于发夹适配器和样品插入物之间。

多重化支持三个选项,在目标扩增或文库制备过程中灵活地加入独特的样品标识符,称为条形码。这是通过单步PCR的条码引物、通过两步PCR的标签条码引物和条码悬臂适配器实现的。

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在(1)PCR过程中,通过包含条形码的目标特定引物或(2)使用条形码通用引物的两步PCR将条形码引物添加到扩增子中。

通过(3)将条形码SMRTbell适配器连接到模板上,将条形码添加到样品中。

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在Sequel、Sequel II和IIe系统上设置复用功能

在PacBio Sequel系统上进行复用的条形码策略取决于应用。所有的工作流程都可以包括条形码,以唯一地识别样品,但在如何将条形码纳入SMRTbell模板上有所不同。下面按应用列出了推荐的条形码、程序、订购单和解复用所需的FASTA文件的清单。

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全基因组测序

随着PacBio Sequel系统吞吐量的增加,全基因组测序的复用能力也相应增长,特别是在微生物测序、从头组装和结构变化方面。了解更多关于全基因组测序应用的信息,请看下面关于复用的细节。

Sequel II and IIe systems

Application Available PacBio product Multiplex level FASTA file Plate map file
SMRTbell barcoded adapter plate 3.0 Max = 96
SMRTbell barcoded adapter plate 3.0 Max = 2
Structural variant detection SMRTbell barcoded adapter plate 3.0 Max = 2

Sequel system

Application Available PacBio product Multiplexing level FASTA file Oligo ordering sheet
Barcoded overhang adapter kit 8A and/or Barcoded overhang adapter kit 8B Max = 16 N/A
Multiplexing is not recommended Not recommended N/A N/A
Structural variant
detection
Multiplexing is not recommended Not recommended N/A N/A
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RNA sequencing

The Iso-Seq method is the PacBio solution for sequencing full-length transcripts,the Iso-Seq express workflow is a one-day protocol that requires only 60–300 ng of total RNA and supports multiplexing of different tissues. Learn more about the RNA sequencing application and see details on multiplexing below:

Sequel II and IIe systems

Application Available PacBio product Multiplexing level FASTA file Oligo ordering sheet
Oligo synthesis provider
Max=12

Sequel system

Application Available PacBio product Multiplexing level FASTA file Oligo ordering sheet
Oligo synthesis provider Max=12
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Metagenomics

Multiplex options are available on the PacBio Sequel systems for both full-length 16S sequencing and shotgun metagenomics profiling applications. Learn more about our metagenomic applications for characterizing microbial communities and see details on multiplexing below:

Sequel II and IIe systems

Application Available PacBio product Multiplexing level FASTA file Oligo ordering sheet
Oligo synthesis provider Max = 192
SMRTbell barcoded adapter plate 3.0 Max = 8

Sequel system

Application Available PacBio product Multiplexing level FASTA file Oligo ordering sheet
Oligo synthesis provider Max = 48
Multiplexing is not recommended Not recommended N/A N/A
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Targeted sequencing

Depending on the amplicon size, multiplex up to 384 barcodes for targeted sequencing. Learn more about the targeted sequencing applications and see details on multiplexing below:

Sequel II and IIe systems

Application Available PacBio product Multiplexing level FASTA file Oligo order sheet / plate map
Barcoded universal primer Barcoded universal primer plate v2 Max = 96
Barcoded M13 primer plate Max = 384
SMRTbell barcoded adapter plate 3.0 Max = 96
Target enrichment Oligo synthesis provider Max = 24
Target enrichment with Twist probes Twist Universal Adapter System Max = 400 Download Order from Twist

Sequel system

Application Available PacBio product Multiplexing level FASTA file Oligo ordering sheet
Barcoded universal primer plate v2 Max = 96
Barcoded M13 primer plate Max = 384
Barcoded overhang adapter Kit 8A, Barcoded overhang adapter Kit 8B Max = 16
Target enrichment Oligo synthesis provider Max = 24
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SMRT analysis barcode analysis overview and requirements

SMRT Link includes a streamlined end-to-end demultiplex barcodes analysis. Overview and details of available features are described here.

Documentation

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